2008

Santiago-Doménech, N., Jiménez-Bemúdez, S., Matas, A.J., Rose, J.K.C. , Muñoz-Blanco, J., Mercado, J.A. and Quesada, M.A. (2008) Antisense inhibition of a pectate lyase gene supports a role for pectin depolymerization in strawberry fruit softening (in press Journal of Experimental Botany).

Alós, E., Roca, M., Iglesias, D.J., Mínguez-Mosquera, M.I., Damasceno, C.M.B., Thannhauser, T.W., Rose, J.K.C., Talón, M. and Cercós, M. (2008) An evaluation of the basis and consequences of a stay-green mutation in the navel negra (nan) citrus mutant using transcriptomic and proteomic profiling and metabolite analysis (in press Plant Physiology).

Lopez-Casado, G., Urbanowicz, B.R., Damasceno C.M.B. and Rose J.K.C. (2008) Plant glycosyl hydrolases and biofuels: a natural marriage. Current Opinion in Plant Biology 11: 329-337..

Damasceno, C.M.B., Bishop, J.G., Ripoll, D.R., Win, J., Kamoun, S. and Rose, J.K.C. (2008) The structure of the glucanase inhibitor protein (GIP) family from Phytophthora species and co-evolution with plant endo-ß-1,3-glucanases. Molecular Plant-Microbe Interactions 21: 820-830.

Urbanowicz, B.R. and Rose J.K.C. (2008) Sustainable biofuels: a daunting challenge for plant scientists. Chemistry Today 26: 23-25.

Yeats, T.H. and Rose, J.K.C. (2008) The biochemistry and biology of extracellular plant lipid-transfer proteins (LTPs) Protein Science 17: 191-198.

2007

Damasceno, C.M.B. and Rose, J.K.C. (2007) Tandem-affinity purification (TAP) tags. Encyclopedia of Life Sciences. Pub. John Wiley & Sons, Ltd: Chichester. http://www.els.net/ [DOI: 10.1002/9780470015902.a0020212]

Urbanowicz, B.R., Bennett, A.B., Catalá, C., del Campillo, E., Hayashi, T., Henrissat, B., Höfte, H., McQueen-Mason, S., Patterson, S., Shoseyov, O., Teeri, T. and Rose, J.K.C. (2007) Structural organization and a standardized nomenclature for plant endo-ß-1,4-glucanases of glycosyl hydrolase family 9. Plant Physiology 144: 1693-1696.

Urbanowicz, B.R., Catalá, C., Irwin, D., Wilson , D.B., Ripoll, D.R. and Rose, J.K.C. (2007) A tomato endo-ß-1,4-glucanase, SlCel9C1, represents a distinct subclass with a new family of carbohydrate binding modules (CBM49). Journal of Biological Chemistry 282: 12066-12074 (front cover).

Saladié, M., Matas, A.J., Isaacson, T. Jenks, M.A., Goodwin, S.M., Niklas , K.J., Xiaolin , R., Labavitch , J.M., Shackel, K.A., Fernie, A.R., Lytovchenko, A., O'Neill , M.A., Watkins, C.B. and Rose, J.K.C. (2007) A re-evaluation of the key factors that contribute to tomato fruit softening and integrity. Plant Physiology 144: 1012-1028.

Nishiyama, K., Guis, M., Rose, J.K.C., Kubo, Y., Bennett, K.A., Wangjin, L., Kato, K., Ushijima, K., Nakano, R., Inaba, A., Bouzayen, M., Latche, A., Pech J.-C. and Bennett, A.B. (2007) Ethylene regulation of fruit softening and cell wall disassembly in Charentais melon. Journal of Experimental Botany 58: 1281-1290.

Vincent, A., Saladié, M., Rose, J.K.C. and Labavitch, J.M. (2007) The linkage between cell wall metabolism and the ripening-associated softening of fruits: Looking to the future. Journal of the Science of Food and Agriculture 87: 1435-1448.

2006

Lee, S.-J., Kim, B.-D. and Rose, J.K.C. (2006) Identification of eukaryotic secreted and cell surface proteins using the yeast secretion trap screen. Nature Protocols 1: 2439-2447.

Lee, S.-J. Kelley, B., Damasceno, C.M.B., St. John, B., Kim, B.-S. Kim, B.-D. and Rose, J.K.C. (2006) A functional screen to characterize the secretomes of eukaryotic phytopathogens and their hosts in planta. Molecular Plant-Microbe Interactions 12: 1368-1377.

Tyler, B.M., Tripathy, S., Zhang, X., Dehal, Jiang. R. H.Y., Aerts, A., Arredondo, F.D., Baxter, L., Bensasson, D., Beynon, J.L., Chapman, J., Damasceno, C.M.B., Dorrance, A.E., Dou, D., Dickerman, A.W., Dubchak, I.L., Garbelotto, M., Gijzen, M., Gordon, S.G., Govers, F., Grunwald, N.J., Huang, W., Ivors, K.L., Jones, R.W., Kamoun, S., Krampis, S., Lamour, K.H., Lee, M.-K., Maclean, D.J., McDonald, W.H., Medina, M., Meijer, H.J.G., Morris, P.F., Nordberg, E.K., Ospina-Giraldo, M.D., Phuntumart, V., Putnam, N.H., Rash, S., Rose, J.K.C., Sakihama, Y., Salamov, A.A., Savidor, A., Scheuring, C.F., Smith, B.M., Sobral, B.W.S., Terry, A., Torto-Alalibo, T.A., Win, J., Xu, Z., Zhang, H., Grigoriev, I.V., Rokhsar, D.S. and Boore, J.L. (2006) Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science 313: 1261-1266.

Isaacson, T., Saravanan, R.S., He, Y., Damasceno, C.M.B., Catalá, C., Saladié, M. and Rose, J.K.C. (2006) Sample extraction techniques for enhanced proteomic analysis of plant tissues. Nature Protocols 1: 769-774.

Stenvik, G.-E., Butenko, M.A., Urbanowicz, B.R., Rose, J.K.C. and Aalen, R.B. (2006) Overexpression of INFLORESCENCE DEFICIENT IN ABSCISSION activates cell separation in vestigial abscission zones in Arabidopsis. The Plant Cell 18: 1467-1476.

Saladié, M., Rose, J.K.C., Cosgrove, D.J. and Catalá, C. (2006) Characterization of a new xyloglucan endotransglucosylase/hydrolase (XTH) from ripening tomato fruit and implications for the diverse modes of enzymic action. The Plant Journal 47: 282-295.

Rozanas, C., Rose, J.K.C. and Beckett, P. (2006) Analysis of tomato fruit ripening using DeCyder 2-D and DeCyder EDA. Discovery Matters 3: 18-19.

Isaacson, T. and Rose, J.K.C. (2006) The plant cell wall proteome, or secretome. In: Plant Proteomics. Annual Plant Reviews Series.  Ed. Finnie, C., Pub. Blackwell Publishing 28:185-209.

Urbanowicz, B.R., Davidson, S.N. and Rose, J.K.C. (2006) Plant cell walls. In: McGraw-Hill 2006 Yearbook of Science & Technology. Pub. McGraw-Hill Professional pp. 238-240

Rose, J.K.C. and Lee, S.-J. (2006) Early insights into the plant cell wall proteome. In: Plant Cell Walls. Ed. T. Hayashi, Pub. Springer pp. 249-257.

2005

Rugkong, A., Rose, J.K.C., Watkins, C.B. (2005). Activity of cell wall-associated enzymes in cold-stored tomato fruit. HortScience 40: 1131.

Yamane, H., Lee, S.-J. Lee, Kim, B.-D., Tao, R. and Rose, J.K.C. (2005) A coupled yeast signal sequence trap and transient plant expression strategy to identify and confirm genes encoding extracellular proteins from peach pistils. J Exp Bot. 56 (418): 2229-2238.

Rose, J.K.C. and Saladié, M. (2005) Proteomic analysis of fruit ripening. Acta Horticulture 682: 211-224.

Saladié, M. and Rose, J.K.C. (2005) Characterization of DFD (Delayed Fruit Deterioration): a new tomato mutant. Acta Horticulture 682: 79-84.

Bishop, J.G., Ripoll, D.R., Bashir, S., Damasceno, C.M.B., Seeds, J.D. and Rose, J.K.C. (2005) Selection on Glycine ß-1,3-endoglucanase genes differentially inhibited by a Phytophthora sojae inhibitor protein. Genetics 169:1009-1019.

2004

Lee, S.-J. Lee, Saravanan, R.S., Damasceno, C.M.B., Yamane, H., Kim, B.-D. and Rose, J.K.C. (2004) Digging deeper into the plant cell wall proteome. Plant Physiology and Biochemistry 42: 979-988.

Rose, J.K.C . Bashir, S., Giovannoni, J.J., Jahn, M.M., Saravanan, R.S. (2004) Tackling the plant proteome: Practical approaches, hurdles and experimental tools. The Plant Journal 39: 715-733.

Alba, R., Fei, Z., Liu, Y., Debbie, P., Gordon, J., Rose, J.K.C. , Martin, G., Tanksley, S., Bouzayen, M., Jahn, M.J. and Giovannoni, J.J. (2004) ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development. The Plant Journal 39: 697-714.

Kende, H., Bradford, K.J., Brummell, D.A., Cho, H.-T.,   Cosgrove, D.J., Fleming, A.J., Gehring, C., Yi, L., McQueen-Mason, S., Rose, J.K.C. , Voesenek, L.A.C.J. (2004) Nomenclature for members of the expansin superfamily of genes and proteins. Plant Molecular Biology 55 (3): 311-314.

Saravanan, R. S. and Rose, J.K.C. (2004) A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 4: 2522-2532 (cover article).

Rose, J.K.C. , Saladié, M. and Catalá, C. (2004) The plot thickens: new perspectives of primary cell wall modification. Current Opinions in Plant Biology 7: 296-301.

Yokoyama, R., Rose, J.K.C. and Nishitani, K. A surprising diversity and abundance of XTHs (xyloglucan endotransglucosylase/hydrolases) in rice: classification and expression analysis (2004) Plant Physiology 134: 1088-1099.

York, W.S., Qin, Q. and Rose, J.K.C. (2004) Proteinaceous inhibitors of endo-ß-glucanases. Biochimica et Biophysica Acta: Proteins and Proteomics. 1696: 223-233.

2003

Irwin, D.C., Cheng, M., Xiang, B., Rose, J.K.C. and Wilson, D.B. (2003) Cloning, expression and characterization of a family 74 xyloglucanase from Thermobifida fusca. European Journal of Biochemistry 270: 3083-3091.

Obenland, D.M., Crisosto, C.H. and Rose, J.K.C. (2003) Expansin protein levels decline with the development of mealiness in peaches. Postharvest Biology and Technology 29:11-18.

Qin, Q., Bergmann, C., Rose, J.K.C. , Saladié, M., Kumar Kolli, V.S., Albersheim, P., Darvill, A.G. and York, W.S. (2003) Characterization of a tomato protein that inhibits a xyloglucan-specific endoglucanase. The Plant Journal 34: 327-338.

Hiwasa K., Rose, J.K.C. , Nakano R., Inaba, A. and Kubo, Y. (2003) Differential expression of seven a-expansin genes during growth and ripening in pear fruit.   Physiologia Plantarum 117: 56-572.

Singh, M., Lewis, P.E., Hardeman, K., Bai, L., Rose, J.K.C. , Mazourek, M., Chomet, P. and Brutnell, T. (2003) Activator ( Ac ) mutagenesis of the pink scutellum1 locus of maize. The Plant Cell 15: 874-884.

Scheible, W., Bashir, S. and Rose J.K.C. (2003) Plant cell walls in the post-genomic era. In Plant Cell Wall Disassembly. In The Plant Cell Wall. Annual Plant Reviews Series.   Ed. J.K.C. Rose, Pub. Blackwell Publishing pp. 325-375.

Rose, J.K.C. , Catalá, C., Gonzalez-Carranza, Zinnia H. and Roberts, J. (2003) Plant cell wall disassembly. In The Plant Cell Wall. Annual Plant Reviews Series.   Ed. J.K.C. Rose, Pub. Blackwell Publishing pp. 264-324.

Saravanan, R.S., Bashir, S. and Rose, J.K.C. (2003) Plant proteomics. In: Handbook of Plant Biotechnology. (Ed. H. Klee) Pub. Wiley and Sons, Ltd. Chichester, UK.

2002

Rozanas, C.R., Beckett, P., Asbury, G.R., Catalá, C. and Rose, J.K.C. (2002) Protein expression changes during tomato fruit ripening using difference gel electrophoresis (DIGE) and matrix-assisted laser desorption ionization mass spectrometry (MALDI-TOF). Proceedings 50th ASMS Conference of Mass Spectrometry and Allied Topics pp.279-280.

Rose, J.K.C. , Braam, J., Fry, S.C. (2002) The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature. Plant and Cell Physiology 43: 1421-1435.

Rose, J.K.C. , Ham, K.-S., Darvill A.G. and Albersheim, P. (2002) Molecular cloning and characterization of glucanase inhibitor proteins (GIPs): co-evolution of a counter-defense mechanism by plant pathogens. The Plant Cell 14: 1329-1345.

Brunner, F., Wirtz, W., Rose, J.K.C. , Darvill, A.G., Govers, F., Scheel, D., Nürnberger, T. A.   (2002) A ß-glucosidase/xylosidase from the phytopathogenic oomycete, Phytophthora infestans . Phytochemistry 59: 689-696.

2001

Catalá, C., Rose, J.K.C. York, W.S, Albersheim, P, Darvill, A.G. and Bennett, A.B. (2001) Characterization of a tomato xyloglucan endotransglycosylase gene that is down-regulated by auxin in etiolated hypocotyls. Plant Physiology (2001) 127: 1180-1192.

2000

Caderas, D., Muster, M., Vogler, H., Mandel, T., Rose, J.K.C. , McQueen-Mason, S. and Kuhlemeier, C. (2000) Limited correlation between expansin gene expression and elongation growth rate. Plant Physiology 123: 1399-1414.

Rose, J.K.C. , Cosgrove, D.J., Albersheim, P., Darvill, A. and Bennett, A.B. (2000) Detection of expansin proteins and activity during tomato fruit ontogeny. Plant Physiology 123: 1583-1592

Catalá, C., Rose, J.K.C. and Bennett, A.B. (2000) Auxin-regulated genes encoding cell wall-modifying proteins are expressed during early tomato fruit growth. Plant Physiology 123: 527-534.

Rose, J.K.C ., O'Neill, M.A., Albersheim. P. and Darvill A. (2000) Functions of the plant primary cell wall. In: " Carbohydrates in Chemistry and Biology. Vol. II Biology of Saccharides ". B. Ernst, G. Hart, P. Sinay (Eds.) pp. 783-806 Pub. Wiley/VCH. Weinheim, Germany.

1999

Rose, J.K.C. and Bennett, A.B. (1999) Cooperative disassembly of the cellulose-xyloglucan network of plant cell walls: Parallels between cell expansion and fruit ripening. Trends in Plant Science . 4: 176-183.

1998

Hadfield, K.A., Rose, J.K.C. and Bennett, A.B. (1998) Polygalacturonase (PG) gene expression in ripe melon fruit supports a role for PG in ripening-associated pectin disassembly. Plant Physiology 117: 363-373.

Rose, J.K.C. , Hadfield, K.A., Labavitch, J.M. and Bennett, A.B. (1998) Temporal sequence of cell wall disassembly in rapidly ripening melon fruit. Plant Physiology 117: 345-361 (cover article).

1997

Rose, J.K.C. , Catalá, C., Brummell, D.A., Lashbrook, C.C., Gonzalez-Bosch, C., and Bennett, A.B. (1997) Tomato endo-ß-1,4-glucanase gene family: regulation by both ethylene and auxin. In: " Biology and Biotechnology of the Plant Hormone Ethylene " Proceedings of the international symposium on the biology and biotechnology of the plant hormone ethylene. A.K. Kanellis, C. Chang, H. Kende, D. Grierson, D. (Eds.). Kluwer Academic Publishers, Dordrecht, Netherlands, pp. 197-205.

Catalá, C., Rose, J.K.C. and Bennett, A.B. (1997) Auxin regulation and spatial localization of a novel endo-1,4-ß-D-glucanase and a xyloglucan endotransglycosylase in tomato hypocotyls. The Plant Journal 12: 417-426 (cover article).

Rose, J.K.C. , Lee, H. and Bennett, A.B. (1997) Expression of a divergent expansin gene is fruit-specific and ripening-regulated. Proceedings of the National Academy of Sciences USA. 94: 5955-5960.

1996

Rose, J.K.C. , Brummell, D.A. and Bennett, A.B. (1996) Two divergent xyloglucan endotransglycosylases exhibit mutually exclusive patterns of expression and differing xyloglucan affinities in nasturtium. Plant Physiology 110: 493-499.

1995

Hadfield, K.A., Rose, J.K.C. and Bennett, A.B. (1995) The respiratory climacteric is present in Charentais ( Cucumis melo var. Reticulatus F1 Alpha) melons ripened on or off the plant. Journal of Experimental Botany 46: 1923-1925. \

1992

Bowsher, C.G., Boulton, E.L., Rose, J.K.C. , Nayagam, S. and Emes, M.J. (1992) Reductant for glutamate synthase is generated by the oxidative pentose phosphate pathway in non-photosynthetic root plastids. The Plant Journal 2: 893-898.

Patents and Patent Applications

Bennett, A.B. and Rose, J.K.C. (1997) Fruit-specific and ripening-regulation expansin genes to control fruit texture and softening. U.S. Patent No. 5,292.303.

Rose, J.K. C. and Lee, S.-J. (2006) “A vector system to identify genes encoding secreted eukaryotic proteins”. Patent application pending serial number 60/816,057.