Peer.Reviewed.Papers | Books.&.Book.Chapters

2017



Cuticle biosynthesis in tomato leaves is developmentally regulated by abscisic acid
Martin, L.B.B., Romero, P., Fich, E.A., Domozych, D.S., Rose, J.K.C.
Plant Physiology 174 (3): 1384-1398. 2017


Postharvest changes in LIN5-down-regulated plants suggests a role for sugar deficiency in cuticle metabolism during ripening
Vallarino, J.G., Yeats, T.H., Maximova, E., Rose, J.K.C., Fernie, A.R. and Osorio, S.
Phytochemistry 142: 11-20. 2017


The Tomato Expression Atlas
Frenandez-Pozo, N., Zheng, Y., Snyder, S., Nicolas, P., Shinozaki, Y., Fei, Z., Catalá, C., Giovannoni, J.J., Rose, J.K.C., Mueller, L.A.
Bioinformatics, DOI: 10.1093/bioinformatics/btx190. 2017


Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes
Tafolla-Arellano, J.C., Zheng, Y., Sun, H., Jiao, C., Ruiz-May, E., Hernández-Oñate, M.A., González-León, A., Báez-Sañudo, R., Fei, Z., Domozych, D., Rose, J.K.C., and Tiznado-Hernández, M.E.
Scientific Reports 7: 46163. 2017


A phenol-enriched cuticle is ancestral to lignin evolution in land plants
Renault, H., Alber, A., Horst, N.A., Lopes, A.B., Fich, E.A., Kriegshauser, L., Wiedemann, G., Ullmann, P., Herrgott, L., Erhardt, M., Pineau, E., Ehlting, J., Schmitt, M., Rose, J.K.C., Reski, R., and Werck-Reichhart, D.
Nature Communications 8: 14713. 2017


CUTIN SYNTHASE2 maintains progressively developing cuticular ridges in Arabidopsis sepals
Hong, L., Brown, J., Segerson, N., Rose, J.K.C., and Roeder, A.
Molecular Plant 10 (4): 560-574. 2017


TATA box insertion provides a selection mechanism for underpinning adaptations to Fe deficiency
Zhang, M., Lv, Y., Wang, Y., Rose, J.K.C., Shen, F., Han, Z., Zhang, X., Xu, X., Wu, T., and Han, Z.
Plant Physiology 173 (1): 715-727. 2017


2016



Laser microdissection of tomato fruit cell and tissue types for transcriptome profiling
Martin, L.B.B., Nicolas, P., Matas, A.J., Shinozaki, Y., Catalá, C., and Rose, J.K.C.
Nature Protocols 11 (12): 2376-2388. 2016


Genetic improvement of tomato by targeted control of fruit softening
Uluisik, S., Chapman, N.H., Smith, R., Poole, M., Adams, G., Gillis, R.B., Besong, T.M.D., Sheldon, J., Stiegelmeyer, S., Perez, L., Samsulrizal, N., Wang, D., Fisk, I.D., Yang, N., Baxter, C., Rickett, D., Fray, R., Blanco-Ulate, B., Powell, A.L.T., Harding, S.E., Craigon, J., Rose, J.K.C., Fich, E.A., Sun, L., Domozych, D.S., Fraser, P.D., Tucker, G.A., Grierson, D., and Seymour, G.B.
Nature Biotechnology 34: 950-952. 2016


The glycerol-3-phosphate acyltransferase GPAT6 from tomato plays a central role in fruit cutin biosynthesis
Petit, J. Bres, C., Mauxion, J.-P., Tai, F.W.J., Martin, L.B.B., Fich, E.A., Joubès, J., Rose, J.K.C., Domergue, F., and Rothan, C.
Plant Physiology 171 (2): 894-913. 2016


The Plant Polyester Cutin: Biosynthesis, Structure, and Biological Roles
Fich, E.A., Segerson, N.A., and Rose, J.K.C.
Annual Review of Plant Biology 67: 207-233. 2016


Application of wide selected-ion monitoring (WiSIM)-data independent acquisition (DIA) to identify tomato fruit proteins regulated by the CUTIN DEFICIENT2 transcription factor
Martin, L.B.B., Sherwood, R.W., Nicklay, J.J., Yang, Y., Muratore-Schroeder, T.L., Anderson, E.T., Thannhauser, T.W, Rose, J.K.C., and Zhang, S.
Proteomics 16: 2081-2094. 2016


Orthology analysis and in vivo complementation studies to elucidate the role of DIR1 during Systemic Acquired Resistance in Arabidopsis thaliana and Cucumis sativus
Isaacs, M., Carella, P., Faubert, J. Rose, J.K.C. and Cameron, R.K.
Frontiers in Plant Science 7: 566. 2016


Solid-state 13C NMR delineates the architectural design of biopolyesters in native and genetically altered tomato fruit cuticles
Chatterjee, S., Matas, A.J., Isaacson, T., Kehlet, C., Rose, J.K.C. and Stark, R.E.
Biomacromolecules 17 (1): 215-224. 2016


Analysis of the tomato leaf transcriptome during successive hemibiotrophic stages of a compatible interaction with the oomycete Pathogen Phytophthora infestans
Zuluaga, A.P., Vega-Arreguín, J.C., Fei, Z., Matas, A.J., Patev, S., Fry, W.E. and Rose, J.K.C.
Molecular Plant Pathology 17 (1): 42-54. 2016


Transcriptional dynamics of Phytophthora infestans during sequential stages of hemibiotrophic infection of tomato
Zuluaga, A.P., Vega-Arreguín, J.C., Fei, Z., Ponnala, L., Lee, S.J., Matas, A.J., Patev, S., Fry, W.E. and Rose, J.K.C.
Molecular Plant Pathology 17 (1): 29-41. 2016


2015



Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism
Shinozaki, Y., Hao, S., Kojima, M., Sakakibara, H., Ozeki-Iida, Y., Zheng, Y., Fei, Z., Zhong, S., Giovannoni, J.J., Rose, J.K.C., Okabe, Y., Heta, Y., Ezura, H. and Ariizumi, T.
The Plant Journal 83 (2): 237-251. 2015


Dissecting the molecular signatures of apical cell-type shoot meristems from two ancient land plant lineages
Frank, M.H., Edwards, M., Schultz, E.R., Mckain, M., Fei, Z., Sørensen, I., Rose, J.K.C. and Scanlon, M.J.
New Phytologist 207(3): 893-904. 2015


Cell wall composition profiling of parasitic giant dodder (Cuscuta reflexa) and its hosts: a priori differences and induced changes
Johnsen. H.R., Striberny, B., Olsen, S., Vidal-Melgosa, S., Fangel, J.U., Willats, W.G.T., Rose, J.K.C. and Krause, K.
New Phytologist 207 (3): 805-816. 2015


2014



The genome of the stress-tolerant wild tomato species Solanum pennellii
Bolger, A., Scossa, F., Bolger, M.E., Lanz, C., Maumus, F., Tohge, T., Quesneville, H., Alseekh, S., Sørensen, I., Lichenstein, G., Fich, E.A., Conte, M., Keller, H., Schneeberger, K., Schwacke, R., Ofner, I., Vrebalov, J., Xu, Y., Osorio, S., Aflitos, S.A., Schijlen, E., Jiménez-Goméz, J.M., Ryngajllo, M., Kimura, S., Kumar, R., Koenig, D., Headland, L.R., Maloof, J.N., Sinha, N., van Ham, R.C.H.J., Lankhorst, R.K., Mao, L., Vogel, A., Arsova, B., Panstruga, R., Fei, Z., Rose, J.K.C., Zamir, D., Carrari, F., Giovannoni, J.J., Weigel, D., Usadel, B. and Fernie, A.R.
Nature Genetics 46: 1034-1038. 2014


There’s more than one way to skin a fruit: formation and functions of fruit cuticles
Martin, L.B.B., and Rose, J.K.C.
Journal of Experimental Botany 65(16): 4639-4651. 2014


Plant Physiology May 2014 Cover Pectin metabolism and assembly in the cell wall of the Charophyte green alga Penium margaritaceum
Domozych, D.S., Sørensen, I., Popper, Z.A., Ochs, J., Adreas, A., Fangel, J., Pielach, A., Sacks, C., Brechka, H., Ruisi-Besares, P., Willats, W.G.T. and Rose, J.K.C.
Plant Physiology 165(1): 105-118. 2014


Mining secreted proteins that function in pepper fruit development and ripening using a yeast secretion trap (YST)
Lee, J.M., Lee, S.-J., Rose, J.K.C., Yeam, I., and Kim, B.-D.
Biochemical and Biophysical Research Communications 446(4): 882-888. 2014


Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species.
Kim, S., Park, M., Yeom, S.-I., Kim, Y.-M., Lee, J.M., Lee, H.-A., Seo, E., Choi, J., Cheong, K., Kim, K.-T., Jung, K., Lee, G.-W., Oh, S.-K., Bae, C., Kim, S.-B., Lee, H.-Y., Kim, S.-Y., Kim, M.-S., Kang, B.-C., Jo, Y.D., Yang, H.B., Jeong, H.-J., Kang, W.-H., Kwon, J.-K., Shin, C., Lim, J.Y, Park, J.H., Huh, J.H., Kim, J.-S., Kim, B.-D., Cohen, O., Paran, I., Suh, M.C., Lee, S.B., Kim, Y.-K., Shin, Y., Noh, S.J., Park., J., Seo, Y.S., Kwon, S.-Y., Kim, H.A., Park, J.M., Kim, H.-J., Choi, S.-B., Bosland, P.W., Reeves, G., Jo, S.-H., Lee, B.-W., Cho, H.-T., Choi, H.-S., Lee, M.-S., Yu, Y., Choi, Y.D., Park, B.-S., van Deynze, A., Ashrafi, H., Hill, T., Kim, W.T., Pai, H.-S., Ahn, H.K., Yeam, I., Giovannoni, J.J., Rose, J.K.C., Sørensen, I., Lee, S.-J., Kim, R.W., Choi, I.-K., Choi, B.-S., Lim, J.-S., Lee, Y.-H. and Choi, D.
Nature Genetics 46: 270-278. 2014


N-Glycoprotein Enrichment by Lectin Affinity Chromatography.
Ruiz-May, E., Catalá, C. and Rose, J.K.C.
Plant Proteomics Methods in Molecular Biology 1072: 633-643. 2014


The postharvest tomato fruit quality of long shelf-Life Mediterranean landraces is substantially influenced by irrigation regimes.
Conesa, M.A., Galmés, J., Ochogavía, J.M., March, J., Jaume, J., Martorell, A., Frances, D.M., Medrano, H., Rose, J.K.C. and Cifre, J.
Postharvest Biology and Technology 93: 114-121. 2014



The Plant Journal March 2014 Cover

Tomato cutin deficient 1 (CD1) and putative orthologs comprise an ancient family of cutin synthase-like (CUS) proteins that are conserved among land plants.
Yeats, T.H., Huang, W., Chatterjee, S., Viart, H. M.-F., Clausen, M.H., Stark, R.E. and Rose, J.K.C.
The Plant Journal 75 (5): 667-675. 2014


A comparative study of lectin affinity based plant N-glycoproteome profiling using tomato fruit as a model.
Ruiz-May, E., Hucko, S., Howe, K.J., Zhang, S., Sherwood, R.W., Thannhauser, T.W. and Rose, J.K.C.
Molecular & Cellular Proteomics 13: 566-579. 2014


The Plant Journal February 2014 Cover

Stable transformation and reverse genetic analysis of Penium margaritaceum: A platform for studies of charophyte green algae, the immediate ancestors of land plants.
Sørensen, I., Fei, Z., Andreas, A., Willats, W.G.T., Domozych, D.S. and Rose, J.K.C.
The Plant Journal 77 (3): 339-351. 2014


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Disruption of the microtubule network alters cellulose deposition and causes major changes in pectin distribution in the cell wall of the green alga, Penium margaritaceum.
Domozych, D.S., Sørensen, I., Sacks, C., Brechka, H., Andreas, A., Fangel, J.U., Rose, J.K.C., Willats, W.G.T. and Popper, Z.A.
Journal of Experimental Botany 65 (2): 465-479. 2014


2013



Plant Cell october 2009 coverAn ATP binding cassette transporter is required for cuticular wax deposition and desiccation tolerance in the moss Physcomitrella patens.
Buda, G.J., Barnes, W.J., Fich, E.A., Park, S., Yeats, T.H., Zhao, L., Domozych, D.S. and Rose, J.K.C.
The Plant Cell 25: 4000-4013. 2013


Journal of Experimental Biology January 2013 CoverThe formation and function of plant cuticles.
Yeats, T.H. and Rose, J.K.C.
Plant Physiology 161 (1): 5-20. 2013


Progress towards the tomato fruit cell wall proteome.
Ruiz-May, E. and Rose, J.K.C.
Frontiers in Plant Science 4:159. DOI: 10.3389/fpls.2013.00159. 2013


Regulation of ripening and opportunities for control in tomato and other fruits.
Seymour, G.B., Chapman, N., Chew, B.L. and Rose, J.K.C.
Plant Biotechnology 11 (3): 269-278. 2013


Catalyzing plant science research with RNA-seq.
Martin, L.B.B., Fei, Z., Giovannoni, J.J. and Rose, J.K.C.
Frontiers in Plant Science 4: 66. 2013


Journal of Experimental Biology January 2013 Cover

Developmental onset of reproductive barriers and associated proteome changes in stigma/styles of Solanum pennellii.
Chalivendra, S.C., Lopez-Casado, G., Kumar, A., Kassenbrock, A.R., Royer, S., Covey, P.A., Dempsey, L., Stack, S.M., Rose, J.K.C., McClure, B. and Bedinger, P.A.
Journal of Experimental Botany 64(1) 265-279. 2013


The tomato SlSHINE3 transcription factor regulates fruit cuticle formation and epidermal patterning.
Shi, J.X., Adato, A., Alkan, N., He, Y., Lashbrooke, J., Matas, A.J., Meir, S., Malitsky, S., Isaacson, T., Prusky, D., Leshkowitz, D., Schreiber, L., Granell, A.R., Widemann, E., Grausem, B., Pinot, F., Rose, J.K.C., Rogachev, I., Rothan, C., and Aharoni, A.
New Phytologist 197(2): 468-80. 2013


2012



Quantitative proteomic analysis reveals that antioxidation mechanisms contribute to cold tolerance in plantain (Musa paradisiaca L.; ABB Group) seedlings.
Yang, Q., Wu, J., Li, C., Peng, X., Wei, Y., He, H., Sheng, O., McCardle, J.A., Chen, W., Yang, Y., Rose, J.K.C., Zhang, S. and Yi, G.
Molecular & Cellular Proteomics 11: 1853-1869. 2012


The FRIABLE1 gene product affects cell adhesion in Arabidopsis.
Neumetzler, L., Humphrey, T., Lumba, S., Snyder, S., Yeats, T.H., Usadel, B., Vasilevski, A, Patel, J., Rose, J.K.C., Persson, S. and Bonetta, D.
PloS One 7(8): e42914. 2012


Plant Cell october 2009 coverThe identification of cutin synthase: formation of the plant polyester cutin.
Yeats, T.H., Martin, L.B.B., Viart, H. M-F., Isaacson, T., He, Y., Zhao, L., Matas, A.J., Buda, G., Domozych, D.S., Clausen, M.H. and Rose, J.K.C.
Nature Chemical Biology 8: 609-611. 2012


Analytical technologies for identification and characterization of the plant N-glycoproteome.
Ruiz-May, E., Thannhauser, T.W., Zhang, S. and Rose, J.K.C.
Frontiers in Plant Science 3: 150. 2012



The secreted plant N-glycoproteome and associated secretory pathways.
Ruiz-May, E., Kim, S.J., Brandizzi, F. and Rose, J.K.C.
Frontiers in Plant Science 3: 117. 2012


Nature 2012The tomato genome sequence provides insights into fleshy fruit evolution.
The Tomato Genome Consortium
Nature 485: 635-641. 2012


Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee.
Acuña, J.R., Padilla, B.E., Flórez C.P., Rubio, J.D., Herrera, J.C., Benivades, P., Lee, S.-J., Yeats, T.H., Egan, A.N., Doyle, J.J. and Rose, J.K.C.
Proceedings of the National Academy of Sciences USA 109: 4197-4202. 2012


Comparative characterization of the glycosylation profiles of an influenza hemagglutinin produced in plant and insect hosts.
Zhang, S., Sherwood, R.W., Yang, Y., Tara Fish, T., Chen, W., McCardle, J. A., Jones, R.M., Yusibov, V., Ruiz-May, E., Rose, J.K.C. and Thannhauser, T.W.
Proteomics 12: 1269-1288. 2012


Cellulose microfibril crystallinity is reduced by mutating C-terminal transmembrane region residues CESA1A903V and CESA3T942I of cellulose synthase.
Harris, D.M., Corbin, K., Wang, T., Gutierrez, R., Bertolo, A.L., Petti, C., Smilgies, D., Estevez, J.M., Bonetta, D., Urbanowicz, B.R., Ehrhardt, D.W., Somerville, C.R., Rose, J.K.C., Hong, M. and DeBolt, S.
Proceedings of the National Academy of Sciences USA 109: 4098-4103. 2012


A yeast secretion trap assay for identification of secreted proteins from eukaryotic phytopathogens and their plant hosts.
Lee, S.-J. and Rose, J.K.C.
Methods in Molecular Biology 835: 519-30. 2012


The charophycean green algae as model systems to study plant cell walls and other evolutionary adaptations that gave rise to land plants.
Sørensen, I., Rose, J.K.C., Doyle, J.J., Domozych, D.S. and Willats, W.G.T.
Plant Signaling and Behavior 7: 1-3. 2012


Enabling proteomic studies with RNA-Seq: the proteome of tomato pollen as a test case.
Lopez-Casado, G., Covey, P.A., Bedinger, P.A., Mueller, L.A., Zhang, S., Fei, Z., Giovannoni, J.J. and Rose, J.K.C.
Proteomics 12: 761-774. 2012


The fruit cuticles of wild tomato species exhibit architectural and chemical diversity, providing a new model for studying the evolution of cuticle function.
Yeats, T.H., Buda, G.J., Wang, Z., Moyle, L.C., Jetter, R., Schaffer, A.A. and Rose, J.K.C.
The Plant Journal 69: 655-666. 2012


2011



Tissue and cell type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation.
Matas, A.J., Yeats, T.H., Buda, G.J., Zheng, Y., Chatterjee, S., Tohge, T., Ponnala, L., Fernie, A.R., Adato, A., Aharoni, A., Stark, R., Fei, Z., Giovannoni, J.J. and Rose, J.K.C.
The Plant Cell 23: 3893-3910. 2011


Systems biology of tomato fruit development: combined transcript, protein and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions.
Osorio, S., Alba, R., Damasceno, C.M.B., Lopez-Casado, G., Lohse, M., Zannor, M.I., Tohge, T., Usadel, B., Rose, J.K.C., Fei, Z., Giovannoni, J.J. and Fernie, A.R.
Plant Physiology 157: 405-425. 2011


Plant Journal 2011The charophycean green algae provide insights into the early origins of plant cell walls.
Sørensen, I., Pettolino, F.A., Bacic, A., Ralph, J., Lu, F., O’Neill, M.A., Fei, Z., Rose, J.K.C., Domozych, D.S., and Willats, W.G.T.
The Plant Journal 68: 201-211. 2011


Yeast secretion trap in pepper following Phytophthora capsici infection identify novel function of plant secreted proteins.
Yeom, S.-I., Baek, H.-K., Oh, S.-K., Kang, W.-H., Lee, S.-J., Seo, E., Rose, J.K.C., Kim, B.-D. and Choi, D.
Molecular Plant Microbe Interactions 24: 671-684. 2011


Towards characterization of the glycoproteome of tomato (Solanum lycopersicum) fruit using Concanavalin A lectin affinity chromatography and LC-MALDI-MS/MS analysis.
Catalá, C., Howe, K.J., Hucko, S., Rose, J.K.C. and Thannhauser, T.W.
Proteomics 11: 1530-1544. 2011


Expression of ripening-related genes in cold stored tomato fruit.
Rugkong, A., McQuinn, R., Giovannoni, J.J., Rose, J.K.C. and Watkins, C.B.
Postharvest Biology and Technology 61: 1-14. 2011


Interspecific reproductive barriers in the tomato clade: opportunities to decipher mechanisms of reproductive isolation.
Bedinger, P., Chetelat, R., McClure, B., Moyle, L.C, Rose, J.K.C., Stack, S., van der Knaap, E., Baek, Y.S., Lopez-Casado, G., Covey, P.A., Kumar, A., Li, W., Nunez, R., Cruz-Garcia, F. and Royer, S.
Sexual Plant Reproduction 24: 171-187. 2011


Characterization of the plant cell wall proteome using high throughput screens.
Lee, S.-J. and Rose, J.K.C.
Methods in Molecular Biology 715: 255-272. 2011


Two oxidosqualene cyclases responsible for biosynthesis of tomato fruit cuticular triterpenoids.
Wang, Z., Guhling, O., Yao, R., Li, F., Yeats, T.H., Rose, J.K.C., and Jetter, R.
Plant Physiology 155: 540-552. 2011


Malate plays a crucial role in starch metabolism, ripening, and soluble solid content of tomato fruit and affects postharvest softening.
Centeno, D., Nunes-Nesi, A., Osorio, S., Bertolo, A.L. F., Carneiro, R.T., Luiz-Araújo W., Steinhauser, M.-C., Michalska, J., Rohrmann, J., Geigenberger, P., Oliver, S., Stitt, M., Carrari, F., Rose, J.K.C. and Fernie, A. R.
The Plant Cell 23: 162-184. 2011


2010



Interspecific reproductive barriers in the tomato clade: opportunities to decipher mechanisms of reproductive isolation.
Bedinger, P.A, Chetelat, R., McClure, B.A., Moyle, L., Rose, J.K.C., Stack, S., van der Knaap, E., Baek, Y.S., Lopez-Casado, G., Covey, P.A., Kumar, A., Li, W., Nunez, R., Cruz-Garcia, F., and Royer, S.
Sexual Plant Reproduction 24: 171-187. 2010


Plant Physiology 2010Blueprints for building plant cell walls.
McCann, M. and Rose, J.K.C.
Plant Physiology 153: 365. 2010


Multiple features that distinguish unilateral incongruity and self-incompatibility in the tomato clade.
Covey, P.A., Kondo, K., Welch, L., Frank, E., Kumar, A., van der Knaap, E., Nuñez, R., Lopez-Casado, G., Rose, J.K.C., McClure, B.A. and Bedinger, P.A.
The Plant Journal 64: 367-378. 2010


Mining the surface proteome of tomato (Solanum lycopersicum) fruit for proteins associated with cuticle biogenesis.
Yeats, T.H., Howe K.J., Matas, A.J., Buda, G.J., Thannhauser, T.W., and Rose, J.K.C.
Journal of Experimental Botany 61(13): 3759-3771. 2010


Tissue specific transcriptome profiling of the citrus fruit epidermis and subepidermis using laser capture microdissection.
Matas, A.J., Agustí, J., Tadeo, F.R., Talón, M. and Rose, J.K.C.
Journal of Experimental Botany 61(12): 3321-3330. 2010


Cell wall metabolism in cold-stored tomato fruit.
Rugkong A., Rose, J.K.C., Lee, S.-J., Giovannoni, J.J., O'Neill, M. and Watkins, C.B.
Postharvest Biology and Technology 57(2): 106-113. 2010


Straying off the highway: trafficking of secreted plant proteins and complexity in the plant cell wall proteome.
Rose, J.K.C. and Lee, S.-J.
Plant Physiology 153: 433-436. 2010


Mediation of the transition from biotrophy to necrotrophy in hemibiotrophic plant pathogens by secreted effector proteins.
Lee, S.-J. and Rose, J.K.C.
Plant Signaling and Behavior 5(6): 769-772. 2010


A secreted effector protein (SNE1) from Phytophthora infestans is a broadly acting suppressor of programmed cell death.
Kelley, B.S., Lee, S.-J., Damasceno, C.M.B., Chakravarthy, S., Kim, B.-D., Martin, G.B. and Rose, J.K.C.
The Plant Journal 62(3): 357-366. 2010


Fruit cuticle lipid composition during development in tomato ripening mutants.
Kosma, D.K., Parsons, E.P., Isaacson, T., Lü, S., Rose, J.K.C. and Jenks, M.A.
Physiologia Plantarum 139(1): 107-117. 2010


Genome sequence analysis of the model grass Brachypodium distachyon: insights into grass genome evolution.
The International Brachypodium Initiative.
Nature 463: 763-768. 2010


2009



Plant Cell october 2009 coverFleshy fruit expansion and ripening are regulated by the tomato SHATTERPROOF gene TAGL1.
Vrebalov, J., Pan, I., Matas Arroyo, A.J., McQuinn, R., Chung, M., Poole, M, Rose, J.K.C., Seymour, G.B., Giovannoni, J.J., and Irish, V.
The Plant Cell 21: 3041-3062. 2009


Arabidopsis LTPG is a Glycosylphosphatidylinositol-anchored lipid transfer protein required for export of lipids to the plant surface.
DeBono, A., Yeats, T., Rose, J.K.C., Bird, D., Jetter, R., Kunst, L. and Samuels, L.
The Plant Cell 21: 1230-1238. 2009


Biology and genetic engineering of fruit maturation for enhanced quality and shelf-life.
Matas, A.J., Gapper, N., Chung, M.-Y., Giovannoni, J.J. and Rose, J.K.C.
Current Opinion in Biotechnology 20: 197-203. 2009


Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues.
Lytovchenko, A., Beleggia, R., Schauer, N., Isaacson, T., Leuendorf, J.E., Hellmann, H., Rose, J.K.C. and Fernie, A.R.
Plant Methods 5: 4. 2009


Plant Journal cover 2009 Buda et al.Three dimensional imaging of plant cuticle architecture using confocal scanning laser microscopy.
Buda, G.J., Isaacson, T., Matas, A.J., Paolillo, D.J. and Rose, J.K.C.
The Plant Journal 60(2): 378-385. 2009


Cutin deficiency in the tomato fruit cuticle consistently affects resistance to microbial infection and biomechanical properties, but not transpirational water loss.
Isaacson, T., Kosma, D.K.,Matas, A.J., Buda, G.J., He, Y., Yu, B., Pravitasari, A., Batteas, J.D., Stark, R.E., Jenks, M.A. and Rose, J.K.C.
The Plant Journal 60(2): 363-366. 2009


2008



Antisense inhibition of a pectate lyase gene supports a role for pectin depolymerization in strawberry fruit softening.
Santiago-Doménech, N., Jiménez-Bemúdez, S., Matas, A.J., Rose, J.K.C. , Mu&ntilede;oz-Blanco, J., Mercado, J.A. and Quesada, M.A.
Journal of Experimental Botany 59: 2769-79. 2008


An evaluation of the basis and consequences of a stay-green mutation in the navel negra citrus mutant using transcriptomic and proteomic profiling and metabolite analysis.
Alós, E., Roca, M., Iglesias, D.J., Mínguez-Mosquera, M.I., Damasceno, C.M.B., Thannhauser, T.W., Rose, J.K.C., Talón, M. and Cercós, M.
Plant Physiology 147: 1300-1315. 2008


Plant glycosyl hydrolases and biofuels: a natural marriage.
Lopez-Casado, G., Urbanowicz, B.R., Damasceno C.M.B. and Rose, J.K.C.
Current Opinion in Plant Biology 11: 329-337. 2008


The structure of the glucanase inhibitor protein (GIP) family from Phytophthora species and co-evolution with plant endo-ß-1,3-glucanases.
Damasceno, C.M.B., Bishop, J.G., Ripoll, D.R., Win, J., Kamoun, S. and Rose, J.K.C.
Molecular Plant-Microbe Interactions 21: 820-830. 2008


Sustainable biofuels: a daunting challenge for plant scientists.
Urbanowicz, B.R. and Rose, J.K.C.
Chemistry Today 26: 23-25. 2008


The biochemistry and biology of extracellular plant lipid-transfer proteins (LTPs)
Yeats, T.H. and Rose, J.K.C.
Protein Science 17: 191-198. 2008


2007



Structural organization and a standardized nomenclature for plant endo-ß-1,4-glucanases of glycosyl hydrolase family 9.
Urbanowicz, B.R., Bennett, A.B., Catalá, C., del Campillo, E., Hayashi, T., Henrissat, B., Höfte, H., McQueen-Mason, S., Patterson, S., Shoseyov, O., Teeri, T. and Rose, J.K.C.
Plant Physiology 144: 1693-1696. 2007


Journal of Biochemistry 207A tomato endo-ß-1,4-glucanase, SlCel9C1, represents a distinct subclass with a new family of carbohydrate binding modules (CBM49).
Urbanowicz, B.R., Catalá, C., Irwin, D., Wilson , D.B., Ripoll, D.R. and Rose, J.K.C.
Journal of Biological Chemistry 282: 12066-12074. 2007


A re-evaluation of the key factors that contribute to tomato fruit softening and integrity.
Saladié, M., Matas, A.J., Isaacson, T. Jenks, M.A., Goodwin, S.M., Niklas, K.J., Xiaolin, R., Labavitch, J.M., Shackel, K.A., Fernie, A.R., Lytovchenko, A., O'Neill , M.A., Watkins, C.B. and Rose, J.K.C.
Plant Physiology 144: 1012-1028. 2007


Ethylene regulation of fruit softening and cell wall disassembly in Charentais melon.
Nishiyama, K., Guis, M., Rose, J.K.C., Kubo, Y., Bennett, K.A., Wangjin, L., Kato, K., Ushijima, K., Nakano, R., Inaba, A., Bouzayen, M., Latche, A., Pech J.-C. and Bennett, A.B.
Journal of Experimental Botany 58: 1281-1290. 2007


The linkage between cell wall metabolism and the ripening-associated softening of fruits: Looking to the future.
Vincent, A., Saladié, M., Rose, J.K.C. and Labavitch, J.M.
Journal of the Science of Food and Agriculture 87: 1435-1448. 2007


2006



Identification of eukaryotic secreted and cell surface proteins using the yeast secretion trap screen.
Lee, S.-J., Kim, B.-D. and Rose, J.K.C.
Nature Protocols 1: 2439-2447. 2006


A functional screen to characterize the secretomes of eukaryotic phytopathogens and their hosts in planta.
Lee, S.-J. Kelley, B., Damasceno, C.M.B., St. John, B., Kim, B.-S. Kim, B.-D. and Rose, J.K.C.
Molecular Plant-Microbe Interactions 12: 1368-1377. 2006


Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis.
Tyler, B.M., Tripathy, S., Zhang, X., Dehal, Jiang. R. H.Y., Aerts, A., Arredondo, F.D., Baxter, L., Bensasson, D., Beynon, J.L., Chapman, J., Damasceno, C.M.B., Dorrance, A.E., Dou, D., Dickerman, A.W., Dubchak, I.L., Garbelotto, M., Gijzen, M., Gordon, S.G., Govers, F., Grunwald, N.J., Huang, W., Ivors, K.L., Jones, R.W., Kamoun, S., Krampis, S., Lamour, K.H., Lee, M.-K., Maclean, D.J., McDonald, W.H., Medina, M., Meijer, H.J.G., Morris, P.F., Nordberg, E.K., Ospina-Giraldo, M.D., Phuntumart, V., Putnam, N.H., Rash, S., Rose, J.K.C., Sakihama, Y., Salamov, A.A., Savidor, A., Scheuring, C.F., Smith, B.M., Sobral, B.W.S., Terry, A., Torto-Alalibo, T.A., Win, J., Xu, Z., Zhang, H., Grigoriev, I.V., Rokhsar, D.S. and Boore, J.L.
Science 313: 1261-1266. 2006


Sample extraction techniques for enhanced proteomic analysis of plant tissues.
Isaacson, T., Saravanan, R.S., He, Y., Damasceno, C.M.B., Catalá, C., Saladié, M. and Rose, J.K.C.
Nature Protocols 1: 769-774. 2006


Overexpression of INFLORESCENCE DEFICIENT IN ABSCISSION activates cell separation in vestigial abscission zones in Arabidopsis.
Stenvik, G.-E., Butenko, M.A., Urbanowicz, B.R., Rose, J.K.C. and Aalen, R.B.
The Plant Cell 18: 1467-1476. 2006


Characterization of a new xyloglucan endotransglucosylase/hydrolase (XTH) from ripening tomato fruit and implications for the diverse modes of enzymic action.
Saladié, M., Rose, J.K.C., Cosgrove, D.J. and Catalá, C.
The Plant Journal 47: 282-295. 2006


Analysis of tomato fruit ripening using DeCyder 2-D and DeCyder EDA.
Rozanas, C., Rose, J.K.C. and Beckett, P.
Discovery Matters 3: 18-19. 2006


2005



Activity of cell wall-associated enzymes in cold-stored tomato fruit.
Rugkong, A., Rose, J.K.C., and Watkins, C.B.
HortScience 40: 1131. 2005


A coupled yeast signal sequence trap and transient plant expression strategy to identify and confirm genes encoding extracellular proteins from peach pistils.
Yamane, H., Lee, S.-J. Lee, Kim, B.-D., Tao, R. and Rose, J.K.C.
Jornal of Experimental Botany 56 (418): 2229-2238. 2005


Proteomic analysis of fruit ripening.
Rose, J.K.C. and Saladié, M.
Acta Horticulture 682: 211-224. 2005


Characterization of DFD (Delayed Fruit Deterioration): a new tomato mutant.
Saladié, M. and Rose, J.K.C.
Acta Horticulture 682: 79-84. 2005


Selection on Glycine ß-1,3-endoglucanase genes differentially inhibited by a Phytophthora sojae inhibitor protein.
Bishop, J.G., Ripoll, D.R., Bashir, S., Damasceno, C.M.B., Seeds, J.D. and Rose, J.K.C.
Genetics 169: 1009-1019. 2005


2004



Digging deeper into the plant cell wall proteome.
Lee, S.-J. Lee, Saravanan, R.S., Damasceno, C.M.B., Yamane, H., Kim, B.-D. and Rose, J.K.C.
Plant Physiology and Biochemistry 42: 979-988. 2004


Tackling the plant proteome: Practical approaches, hurdles and experimental tools.
Rose, J.K.C. Bashir, S., Giovannoni, J.J., Jahn, M.M., and Saravanan, R.S.
The Plant Journal 39: 715-733. 2004


ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development.
Alba, R., Fei, Z., Liu, Y., Debbie, P., Gordon, J., Rose, J.K.C. , Martin, G., Tanksley, S., Bouzayen, M., Jahn, M.J. and Giovannoni, J.J.
The Plant Journal 39: 697-714. 2004


Nomenclature for members of the expansin superfamily of genes and proteins.
Kende, H., Bradford, K.J., Brummell, D.A., Cho, H.-T., Cosgrove, D.J., Fleming, A.J., Gehring, C., Yi, L., McQueen-Mason, S., Rose, J.K.C., and Voesenek, L.A.C.J.
Plant Molecular Biology 55(3): 311-314. 2004


#A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues.
Saravanan, R. S. and Rose, J.K.C.
Proteomics 4: 2522-2532. 2004


The plot thickens: new perspectives of primary cell wall modification.
Rose, J.K.C., Saladié, M. and Catalá, C.
Current Opinions in Plant Biology 7: 296-301. 2004


A surprising diversity and abundance of XTHs (xyloglucan endotransglucosylase/hydrolases) in rice: classification and expression analysis.
Yokoyama, R., Rose, J.K.C. and Nishitani, K.
Plant Physiology 134: 1088-1099. 2004


Proteinaceous inhibitors of endo-ß-glucanases.
York, W.S., Qin, Q. and Rose, J.K.C.
Biochimica et Biophysica Acta: Proteins and Proteomics 1696: 223-233. 2004


2003



Cloning, expression and characterization of a family 74 xyloglucanase from Thermobifida fusca.
Irwin, D.C., Cheng, M., Xiang, B., Rose, J.K.C. and Wilson, D.B.
European Journal of Biochemistry 270: 3083-3091. 2003


Expansin protein levels decline with the development of mealiness in peaches.
Obenland, D.M., Crisosto, C.H. and Rose, J.K.C.
Postharvest Biology and Technology 29:11-18. 2003


Characterization of a tomato protein that inhibits a xyloglucan-specific endoglucanase.
Qin, Q., Bergmann, C., Rose, J.K.C. , Saladié, M., Kumar Kolli, V.S., Albersheim, P., Darvill, A.G. and York, W.S.
The Plant Journal 34: 327-338. 2003


Differential expression of seven a-expansin genes during growth and ripening in pear fruit.
Hiwasa K., Rose, J.K.C. , Nakano R., Inaba, A. and Kubo, Y.
Physiologia Plantarum 117: 56-572. 2003


Activator mutagenesis of the pink scutellum1/viviparous7 locus of maize.
Singh, M., Lewis, P.E., Hardeman, K., Bai, L., Rose, J.K.C. , Mazourek, M., Chomet, P. and Brutnell, T.P.
The Plant Cell 15: 874-884. 2003


2002



Protein expression changes during tomato fruit ripening using difference gel electrophoresis (DIGE) and matrix-assisted laser desorption ionization mass spectrometry (MALDI-TOF).
Rozanas, C.R., Beckett, P., Asbury, G.R., Catalá, C. and Rose, J.K.C.
Proceedings 50th ASMS Conference of Mass Spectrometry and Allied Topics pp. 279-280. 2002


The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature.
Rose, J.K.C. , Braam, J., and Fry, S.C.
Plant and Cell Physiology 43: 1421-1435. 2002


Molecular cloning and characterization of glucanase inhibitor proteins (GIPs): co-evolution of a counter-defense mechanism by plant pathogens.
Rose, J.K.C. , Ham, K.-S., Darvill A.G. and Albersheim, P.
The Plant Cell 14: 1329-1345. 2002


A ß-glucosidase/xylosidase from the phytopathogenic oomycete, Phytophthora infestans.
Brunner, F., Wirtz, W., Rose, J.K.C. , Darvill, A.G., Govers, F., Scheel, D., and Nürnberger, T. A.
Phytochemistry 59: 689-696. 2002


2001



Characterization of a tomato xyloglucan endotransglycosylase gene that is down-regulated by auxin in etiolated hypocotyls.
Catalá, C., Rose, J.K.C. York, W.S, Albersheim, P, Darvill, A.G. and Bennett, A.B.
Plant Physiology 127: 1180-1192. 2001


2000



Limited correlation between expansin gene expression and elongation growth rate.
Caderas, D., Muster, M., Vogler, H., Mandel, T., Rose, J.K.C. , McQueen-Mason, S. and Kuhlemeier, C.
Plant Physiology 123: 1399-1414. 2000


Detection of expansin proteins and activity during tomato fruit ontogeny.
Rose, J.K.C. , Cosgrove, D.J., Albersheim, P., Darvill, A. and Bennett, A.B.
Plant Physiology 123: 1583-1592. 2000


Auxin-regulated genes encoding cell wall-modifying proteins are expressed during early tomato fruit growth.
Catalá, C., Rose, J.K.C. and Bennett, A.B.
Plant Physiology 123: 527-534. 2000


1999



Cooperative disassembly of the cellulose-xyloglucan network of plant cell walls: Parallels between cell expansion and fruit ripening.
Rose, J.K.C. and Bennett, A.B.
Trends in Plant Science 4: 176-183. 1999


1998



Polygalacturonase (PG) gene expression in ripe melon fruit supports a role for PG in ripening-associated pectin disassembly.
Hadfield, K.A., Rose, J.K.C. and Bennett, A.B.
Plant Physiology 117: 363-373. 1998


#Temporal sequence of cell wall disassembly in rapidly ripening melon fruit.
Rose, J.K.C. , Hadfield, K.A., Labavitch, J.M. and Bennett, A.B.
Plant Physiology 117: 345-361. 1998


1997



#Auxin regulation and spatial localization of a novel endo-1,4-ß-D-glucanase and a xyloglucan endotransglycosylase in tomato hypocotyls.
Catalá, C., Rose, J.K.C. and Bennett, A.B.
The Plant Journal 12: 417-426. 1997


Expression of a divergent expansin gene is fruit-specific and ripening-regulated.
Rose, J.K.C., Lee, H. and Bennett, A.B.
Proceedings of the National Academy of Sciences USA 94: 5955-5960. 1997


1996



Two divergent xyloglucan endotransglycosylases exhibit mutually exclusive patterns of expression and differing xyloglucan affinities in nasturtium.
Rose, J.K.C. , Brummell, D.A. and Bennett, A.B.
Plant Physiology 110: 493-499. 1996


1995



The respiratory climacteric is present in Charentais (Cucumis melo var. Reticulatus F1 Alpha) melons ripened on or off the plant.
Hadfield, K.A., Rose, J.K.C. and Bennett, A.B.
Journal of Experimental Botany 46: 1923-1925. 1995


1992



Reductant for glutamate synthase is generated by the oxidative pentose phosphate pathway in non-photosynthetic root plastids.
Bowsher, C.G., Boulton, E.L., Rose, J.K.C., Nayagam, S. and Emes, M.J.
The Plant Journal 2: 893-898. 1992